General troubleshooting guide for the EpiDiverse analysis pipelines
Sometimes Singularity runs into problems when pulling multiple images at the same time for a pipeline run. In these instances it is sometimes better to pull the images manually into the directory that the pipeline will be run from, using for instance the following code:
If you still have an issue with running the pipeline then feel free to contact us at info@epidiverse.eu or by opening an issue in the respective pipeline repository on GitHub asking for help.
Check the for more information about configuring Singularity
If you have problems that are directly related to Nextflow and not our pipelines then check out the or the .