EpiDiverse
TextbookEpidiverse ToolkitLectures
  • Introduction to Ecological Plant Epigenetics
  • Ecology
    • Phenotypic plasticity
      • Introduction: What is phenotypic plasticity?
      • Phenotypic plasticity at the molecular scale
      • Transgenerational plasticity and adaptation
      • Mechanisms of transgenerational responses
      • Ecological and evolutionary implications of phenotypic plasticity
      • References
    • Plant Defense Response
      • Priming
      • Abiotic factors
      • Biotic interactions
      • Transgenerational transmission of induced defenses
      • Future directions
      • Designing more ambitious studies
      • Conclusion
      • References
    • Epigenetics in Evolution
      • Current evolutionary theory
      • Extended Synthesis and future perspectives
      • Epigenetics role in evolution
      • Stability of epigentic marks
      • Phenotypic effects
      • Genetics - epigenetics
      • Natural patterns of DNA methylation
      • References
    • Genetic and epigenetic variation in natural populations across large spatial scales
      • Introduction: From genetic diversity to epigenetic diversity
      • Ecological levels of organization
      • Effects of Epigenetic Diversity
      • References
    • Conservation epigenetics
      • Conservation Epigenetics – will it come or will it go?
      • Increasing habitat and stress heterogeneity
      • Epimutation markers as a tool for conservation management
      • References
  • Molecular Biology
    • Chromatin organization and modifications regulating transcription
    • DNA Methylation
      • DNA methylation is the primary epigenetic mark
      • DNA methylation and demethylation
      • Distribution of methylcytosine in plant genomes
      • DNA methylation and imprinting
      • References
  • Bioinformatics
    • Bisulfite Sequencing Methods
      • Principles of Bisulfite Sequencing
      • Experimental Design
      • Library Preparation
      • Computational Processing
      • Alternative Methods
      • References
  • EpiDiverse Toolkit
    • Best Practice Pipelines
    • Installation
    • Troubleshooting
  • Lectures
    • Phenotypic plasticity - Vitek Latzel
    • Spatial patterns of epigenetic diversity - Katrin Heer
    • Natural variation of methylation - Detlef Weigel
  • Epigenetic talks
  • Appendix
    • Glossary
    • Acknowledgement
  • EpiDiverse
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Introduction to Ecological Plant Epigenetics

Free online learning platform on ecological plant epigenetics

This book was written and the lectures were recorded in the framework of the European Training Network “EpiDiverse” funded from the EU Horizon 2020 program under Marie Skłodowska-Curie grant agreement No 764965.

Authors: Adam Nunn, Adrián Contreras Garrido, Anupoma Niloya Troyee, Bárbara Díez Rodríguez, Bhumika Dubay, Cristian Peña, Daniela Ramos-Cruz, Dario Galanti, Iris Sammarco, María Estefanía López, Morgane van Antro, Nilay Can, Paloma Perez-Bello Gil, Panpan Zhang, Samar Fatma

Lecturers: Detlef Weigel, Katrin Heer, Vitek Latzel

Editors: Christian Lampei, Katrin Heer, Lars Opgenoorth

Getting started with the EpiDiverse online learning platform.

EpiDiverse is a Marie Skłodowska-Curie Innovative Training Network aimed at the study of epigenetic variation in wild plant species. The network joins research groups from ecology, molecular (epi)genetics, and bioinformatics to explore the genomic basis, molecular mechanisms, and ecological significance of epigenetic variation in natural plant populations.

The 15 (former) Ph.D. students of the network decided that they wanted to provide a textbook and online learning material for beginners in Ecological Plant Epigenetics. Or in other words, they wanted to help others with the kind of material, they were missing when they started this project in 2017. The platform consists of an introductory textbook, the Epidiverse toolkit, and lectures. We hope that you like the result and that it helps you to get started in this exciting research field.

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