Troubleshooting
General troubleshooting guide for the EpiDiverse analysis pipelines
Singularity issues
Sometimes Singularity runs into problems when pulling multiple images at the same time for a pipeline run. In these instances it is sometimes better to pull the images manually into the directory that the pipeline will be run from, using for instance the following code:
Check the Nextflow Documentation for more information about configuring Singularity
Extra resources and getting help
If you still have an issue with running the pipeline then feel free to contact us at info@epidiverse.eu or by opening an issue in the respective pipeline repository on GitHub asking for help.
If you have problems that are directly related to Nextflow and not our pipelines then check out the Nextflow gitter channel or the google group.
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